Pique – Fast & accurate ChIP-Seq peak finder specifically for microbial data
JContextExplorer 2.0 – Official Release May 22, 2013
A Tree-based approach to facilitate cross-species genomic context comparison.
This version has a more classic look and feel.
JCE now starts with the main window, and features a central menu bar. Data may be loaded in one or more genome sets, which the user may switch between. In addition to data import via files, data may now be directly imported from NCBI’s online database, or streamed in from one or more pre-existing genome sets available on this page.
For a complete description of the new features, improvements, and bug fixes, please see the updated manual and tutorial videos.
Version 2 of the software is now complete, however the tutorial videos and user’s manual have not yet been updated.
|A Tree-based approach to facilitate cross-species genomic context comparison.
Supplemental data set: 22 Alpha and Gamma proteobacteria Download
Source Code: GitHub